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2,201 to 2,210 of 12,708 Results
admixed_9_9_1_77_23_0_115.epi.VEF_report.txt
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Plain Text - 76.4 KB - MD5: d5bd0787248f8e32972d1bdd91ea3947
Methylation report file
admix.R
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Syntax - 4.2 KB - MD5: a8cfafefe43de15378dfced0992af9c4
An R script that generates admixed FASTQ files
admix.table
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Unknown - 6.8 KB - MD5: 14c17a4a1a7759bc3dd4b7179842aa73
Detailed information on admixing sequencing files. Decription of columns: 01. idx1: index of the first file 02. idx2: index of the second file 03. idx3: index of the methylation control file 04. frac1: fraction of reads from the first file 05. frac2: fraction of reads from the second file 06. frac3: fraction of reads from t...
all_shell_commands.txt
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Plain Text - 7.6 KB - MD5: e534f3f6b3cab8907f202877564bff54
A collection of BASH/R script commands used to process data files
amplicon-highdepth-bismark.time
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Unknown - 641 B - MD5: dc498ee1ffe10ef6e7366eb1e40f0c7e
Performance metrics (elapsed time) of high-depth amplicon sequencing data
amplicon-highdepth-dragen39.log
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Plain Text - 33.7 KB - MD5: a7627847d487dd99235812a6cab55d58
Performance metrics (elapsed time) of high-depth amplicon sequencing data
amplicon-highdepth-epi-meth-135.txt
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Plain Text - 10.4 KB - MD5: 1c2d22c950c6182f8fda71f35acda342
Performance metrics (elapsed time) of high-depth amplicon sequencing data
BRCA1+CDH1+CDKN2A+MGMT+MLH1.amplicons.bed
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
PLINK Binary - 181 B - MD5: e6ac254acd34c5bf2a7ffd9e2f5ba254
A Browser Extensible Data (BED) file containing genomic positions of amplicons.
capture-highdepth-bismark.time
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Unknown - 203 B - MD5: ae95783cba8737279535e02405b38a46
Performance metrics (elapsed time) of high-depth capture sequencing data analysis
capture-highdepth-dragen39.log
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Plain Text - 9.6 KB - MD5: 298c8b4f12111807fb76099345f0f075
Performance metrics (elapsed time) of high-depth capture sequencing data analysis
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